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Bra008969 protein (Brassica rapa) - STRING interaction network
"Bra008969" - AT5G11340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008969AT5G11340 (E=8e-084) | GCN5-related N-acetyltransferase (GNAT) family protein (164 aa)    
Predicted Functional Partners:
Bra040280
AT3G06610 (E=1e-038) | DNA-binding enhancer protein-related (115 aa)
     
 
  0.921
Bra029592
AT3G06610 (E=7e-038) | DNA-binding enhancer protein-related (115 aa)
     
 
  0.921
Bra035184
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (897 aa)
     
 
  0.917
Bra008474
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1274 aa)
     
 
  0.917
Bra003565
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1618 aa)
     
 
  0.917
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
       
      0.917
Bra027160
AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (236 aa)
       
      0.917
Bra019993
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (844 aa)
       
      0.917
Bra002650
AT5G58450 (E=0.0) | binding (999 aa)
     
 
  0.916
Bra038786
AT4G21110 (E=2e-085) | G10 family protein (145 aa)
     
      0.914
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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