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Bra008976 protein (Brassica rapa) - STRING interaction network
"Bra008976" - AT5G11260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008976AT5G11260 (E=6e-048) HY5, TED 5 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (164 aa)    
Predicted Functional Partners:
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
       
  0.995
Bra004545
AT2G46340 (E=0.0) SPA1 | SPA1 (SUPPRESSOR OF PHYA-105 1); protein binding / signal transducer (1010 aa)
       
  0.967
Bra022192
AT4G16250 (E=0.0) PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer (1192 aa)
       
 
  0.955
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
       
  0.953
Bra031330
AT3G22170 (E=0.0) FHY3 | FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor (840 aa)
       
 
  0.946
Bra000702
AT4G10180 (E=3e-269) DET1, FUS2, ATDET1 | DET1 (DE-ETIOLATED 1); catalytic (537 aa)
       
 
  0.943
Bra004503
AT2G46830 (E=2e-117) CCA1 | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (552 aa)
       
 
  0.940
Bra026485
AT5G23730 (E=3e-107) | nucleotide binding (198 aa)
     
 
  0.931
Bra035252
AT4G11110 (E=0.0) SPA2 | SPA2 (SPA1-RELATED 2); protein binding / signal transducer (980 aa)
       
  0.927
Bra027259
AT3G15354 (E=0.0) SPA3 | SPA3 (SPA1-RELATED 3); protein binding / signal transducer (794 aa)
       
  0.927
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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