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Bra008979 protein (Brassica rapa) - STRING interaction network
"Bra008979" - AT5G11240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008979AT5G11240 (E=8e-298) | transducin family protein / WD-40 repeat family protein (616 aa)    
Predicted Functional Partners:
Bra005881
AT2G47990 (E=4e-225) SWA1, EDA13, EDA19 | SWA1 (SLOW WALKER1); nucleotide binding (533 aa)
     
  0.999
Bra010934
AT1G27470 (E=0.0) | transducin-related / WD-40 repeat protein-related (792 aa)
     
  0.999
Bra000634
AT4G07410 (E=0.0) | transducin family protein / WD-40 repeat family protein (801 aa)
     
  0.999
Bra032831
AT1G27470 (E=0.0) | transducin-related / WD-40 repeat protein-related (800 aa)
     
  0.999
Bra038829
AT2G18900 (E=0.0) | transducin family protein / WD-40 repeat family protein (952 aa)
     
  0.996
Bra038556
AT2G18900 (E=1e-040) | transducin family protein / WD-40 repeat family protein (101 aa)
     
  0.996
Bra036111
AT5G27120 (E=2e-232) | SAR DNA-binding protein, putative (536 aa)
     
  0.996
Bra020601
AT5G27120 (E=3e-109) | SAR DNA-binding protein, putative (488 aa)
     
  0.996
Bra009978
AT5G27120 (E=4e-233) | SAR DNA-binding protein, putative (537 aa)
     
  0.996
Bra029585
AT3G06530 (E=0.0) | binding (2208 aa)
     
  0.995
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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