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Bra008981 protein (Brassica rapa) - STRING interaction network
"Bra008981" - AT5G25400 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008981AT5G25400 (E=3e-166) | phosphate translocator-related (350 aa)    
Predicted Functional Partners:
Bra038468
AT4G16470 (E=5e-158) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR-AT1G11290.1); Has 12729 Blast hits to 4676 proteins in 132 species- Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 25; Plants - 12474; Vi [...] (474 aa)
           
  0.495
Bra034448
AT1G34020 (E=2e-162) | transporter-related (335 aa)
           
  0.495
Bra028027
AT1G34020 (E=2e-165) | transporter-related (335 aa)
           
  0.495
Bra011863
AT4G39390 (E=5e-156) ATNST-KT1, NST-K1 | NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter (335 aa)
           
  0.495
Bra010685
AT4G39390 (E=1e-156) ATNST-KT1, NST-K1 | NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter (335 aa)
           
  0.495
Bra000693
AT4G09810 (E=3e-155) | transporter-related (334 aa)
           
  0.495
Bra007578
AT3G61170 (E=3e-225) | pentatricopeptide (PPR) repeat-containing protein (803 aa)
           
  0.483
Bra040073
AT4G32272 (E=1e-171) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF250 (InterPro-IPR004853); BEST Arabidopsis thaliana protein match is- UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related (TAIR-AT4G31600.1); Has 1302 Blast hits to 1300 proteins in 174 species- Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 239; Plants - 567; Viruses - 0; Other Eukaryotes - 116 (source- NCBI BLink). (344 aa)
           
  0.473
Bra031568
AT1G07290 (E=2e-157) | nucleotide-sugar transmembrane transporter (362 aa)
           
  0.473
Bra027909
AT2G13650 (E=7e-163) GONST1 | GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter (329 aa)
           
  0.473
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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