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Bra008983 protein (Brassica rapa) - STRING interaction network
"Bra008983" - AT5G11200 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008983AT5G11200 (E=1e-128) | DEAD/DEAH box helicase, putative (472 aa)    
Predicted Functional Partners:
Bra028145
AT5G37720 (E=2e-081) | RNA and export factor-binding protein, putative (260 aa)
     
  0.978
Bra020273
AT5G59950 (E=7e-067) | RNA and export factor-binding protein, putative (218 aa)
     
  0.978
Bra009581
AT5G02530 (E=2e-068) | RNA and export factor-binding protein, putative (276 aa)
     
  0.978
Bra005728
AT5G02530 (E=1e-081) | RNA and export factor-binding protein, putative (334 aa)
     
  0.978
Bra004158
AT1G66260 (E=1e-061) | RNA and export factor-binding protein, putative (288 aa)
     
  0.978
Bra002519
AT5G59950 (E=7e-074) | RNA and export factor-binding protein, putative (238 aa)
     
  0.978
Bra010976
AT1G24706 (E=0.0) | unknown protein (1816 aa)
     
  0.976
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
   
  0.975
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
   
  0.975
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
   
  0.967
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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