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Bra008989 protein (Brassica rapa) - STRING interaction network
"Bra008989" - AT2G40060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008989AT2G40060 (E=6e-064) | protein binding / structural molecule (189 aa)    
Predicted Functional Partners:
Bra034864
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1488 aa)
       
 
  0.662
Bra034166
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1448 aa)
       
 
  0.662
Bra029698
AT3G08530 (E=0.0) | clathrin heavy chain, putative (1479 aa)
       
 
  0.662
Bra001391
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1452 aa)
       
 
  0.662
Bra001286
AT3G08530 (E=0.0) | clathrin heavy chain, putative (1484 aa)
       
 
  0.662
Bra037603
AT5G22780 (E=0.0) | adaptin family protein (1014 aa)
       
      0.482
Bra002427
AT5G22780 (E=0.0) | adaptin family protein (1007 aa)
       
      0.482
Bra033370
AT1G03060 (E=0.0) | WD-40 repeat family protein / beige-related (3552 aa)
           
  0.422
Bra000869
AT4G02660 (E=0.0) | WD-40 repeat family protein / beige-related (3575 aa)
           
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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