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Bra009002 protein (Brassica rapa) - STRING interaction network
"Bra009002" - AT5G10940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009002AT5G10940 (E=0.0) | transducin family protein / WD-40 repeat family protein (754 aa)    
Predicted Functional Partners:
Bra020884
AT4G21100 (E=0.0) DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (1282 aa)
     
 
  0.911
Bra029577
AT4G05420 (E=0.0) DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (1086 aa)
     
 
  0.909
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
     
 
  0.535
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
     
 
  0.535
Bra039229
AT2G24100 (E=8e-166) | unknown protein (429 aa)
           
  0.505
Bra032258
AT1G48620 (E=2e-042) HON5 | HON5 (High Mobility Group Family A 5); DNA binding (603 aa)
           
  0.489
Bra024044
AT4G30780 (E=2e-256) | unknown protein (568 aa)
           
  0.485
Bra011221
AT4G30780 (E=4e-257) | unknown protein (569 aa)
           
  0.485
Bra023615
AT5G17370 (E=8e-109) | WD-40 repeat family protein (486 aa)
           
  0.483
Bra006405
AT5G17370 (E=3e-021) | WD-40 repeat family protein (216 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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