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Bra009010 protein (Brassica rapa) - STRING interaction network
"Bra009010" - AT5G10730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009010AT5G10730 (E=1e-136) | binding / catalytic/ coenzyme binding (288 aa)    
Predicted Functional Partners:
Bra032017
AT3G03100 (E=2e-089) | NADH-ubiquinone oxidoreductase family protein (159 aa)
     
    0.940
Bra021373
AT3G03100 (E=3e-091) | NADH-ubiquinone oxidoreductase family protein (159 aa)
     
    0.940
Bra023341
AT5G11770 (E=3e-082) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (217 aa)
   
  0.937
Bra008938
AT5G11770 (E=2e-102) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (216 aa)
   
  0.937
Bra006117
AT5G11770 (E=6e-089) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (217 aa)
   
  0.937
Bra009347
AT5G08530 (E=5e-233) CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH (407 aa)
     
  0.873
Bra005998
AT5G08530 (E=1e-232) CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH (407 aa)
     
  0.873
Bra022912
AT3G11380 (E=8e-041) | pentatricopeptide (PPR) repeat-containing protein (879 aa)
   
   
  0.852
Bra029511
AT4G04640 (E=2e-165) ATPC1 | ATPC1; enzyme regulator (375 aa)
   
        0.848
Bra022908
AT2G33040 (E=2e-172) | ATP synthase gamma chain, mitochondrial (ATPC) (325 aa)
   
        0.848
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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