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Bra009016 protein (Brassica rapa) - STRING interaction network
"Bra009016" - AT5G10630 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009016AT5G10630 (E=1e-013) | elongation factor 1-alpha, putative / EF-1-alpha, putative (72 aa)    
Predicted Functional Partners:
Bra037523
AT5G47880 (E=3e-233) ERF1-1 | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor (434 aa)
     
  0.963
Bra034244
AT3G26618 (E=7e-247) ERF1-3 | ERF1-3 (eukaryotic release factor 1-3); translation release factor (435 aa)
     
  0.963
Bra020726
AT5G47880 (E=6e-032) ERF1-1 | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor (260 aa)
     
  0.963
Bra016748
AT1G12920 (E=1e-245) ERF1-2 | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor (435 aa)
     
  0.963
Bra038970
AT3G58390 (E=1e-124) | eukaryotic release factor 1 family protein / eRF1 family protein ; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (419 aa)
     
 
  0.950
Bra026328
AT4G27650 (E=1e-157) PEL1 | PEL1 (PELOTA); translation release factor ; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (371 aa)
     
 
  0.950
Bra019037
AT4G27650 (E=5e-203) PEL1 | PEL1 (PELOTA); translation release factor ; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (378 aa)
     
 
  0.950
Bra004139
AT5G38890 (E=1e-055) | exoribonuclease-related (137 aa)
       
 
  0.942
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.941
Bra033392
AT1G03360 (E=1e-152) ATRRP4 | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease (322 aa)
       
 
  0.940
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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