STRINGSTRING
Bra009018 protein (Brassica rapa) - STRING interaction network
"Bra009018" - AT5G10620 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra009018AT5G10620 (E=2e-086) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- SPOUT methyltransferase, predicted (InterPro-IPR003742); Has 3142 Blast hits to 3142 proteins in 1101 species- Archae - 27; Bacteria - 2338; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 755 (source- NCBI BLink). (174 aa)    
Predicted Functional Partners:
Bra017051
AT2G39800 (E=0.0) P5CS1, ATP5CS | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (717 aa)
         
  0.718
Bra014732
AT3G55610 (E=0.0) P5CS2 | P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase (719 aa)
         
  0.718
Bra007179
AT3G55610 (E=0.0) P5CS2 | P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase (727 aa)
         
  0.718
Bra005012
AT2G39800 (E=0.0) P5CS1, ATP5CS | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (717 aa)
         
  0.718
Bra000150
AT2G39800 (E=0.0) P5CS1, ATP5CS | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (715 aa)
         
  0.718
Bra039355
AT3G12930 (E=5e-107) | INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Iojap-related protein (InterPro-IPR004394); Has 2517 Blast hits to 2517 proteins in 833 species- Archae - 0; Bacteria - 1551; Metazoa - 22; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 909 (source- NCBI BLink). (234 aa)
   
   
  0.565
Bra034716
AT3G12930 (E=2e-095) | INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Iojap-related protein (InterPro-IPR004394); Has 2517 Blast hits to 2517 proteins in 833 species- Archae - 0; Bacteria - 1551; Metazoa - 22; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 909 (source- NCBI BLink). (237 aa)
   
   
  0.565
Bra004239
AT1G67620 (E=7e-059) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- Iojap-related protein (InterPro-IPR004394); Has 3104 Blast hits to 3104 proteins in 983 species- Archae - 0; Bacteria - 1779; Metazoa - 74; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1217 (source- NCBI BLink). (470 aa)
   
   
  0.565
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
              0.557
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
              0.557
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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