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Bra009029 protein (Brassica rapa) - STRING interaction network
"Bra009029" - AT5G10480 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009029AT5G10480 (E=3e-043) PAS2, PEP | PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase (176 aa)    
Predicted Functional Partners:
Bra007154
AT3G55360 (E=7e-174) CER10, ECR, ATTSC13, TSC13 | CER10; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) (310 aa)
     
  0.850
Bra036090
AT3G50560 (E=2e-110) | short-chain dehydrogenase/reductase (SDR) family protein (274 aa)
     
  0.608
Bra033983
AT1G67730 (E=7e-163) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (319 aa)
     
  0.597
Bra004251
AT1G67730 (E=4e-164) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (318 aa)
     
  0.597
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
     
   
  0.494
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
     
   
  0.494
Bra032801
AT1G24470 (E=2e-145) KCR2 | short-chain dehydrogenase/reductase (SDR) family protein (303 aa)
     
  0.470
Bra031996
AT3G03330 (E=8e-081) | short-chain dehydrogenase/reductase (SDR) family protein (358 aa)
     
  0.423
Bra031995
AT3G03330 (E=1e-153) | short-chain dehydrogenase/reductase (SDR) family protein (328 aa)
     
  0.423
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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