STRINGSTRING
Bra009038 protein (Brassica rapa) - STRING interaction network
"Bra009038" - AT5G10370 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009038AT5G10370 (E=0.0) | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (1767 aa)    
Predicted Functional Partners:
Bra019919
AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein (565 aa)
     
  0.968
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
     
  0.965
Bra027160
AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (236 aa)
     
  0.965
Bra019993
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (844 aa)
     
  0.965
Bra030575
AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein (574 aa)
     
  0.965
Bra021844
AT2G33340 (E=3e-236) | nucleotide binding / ubiquitin-protein ligase (442 aa)
     
  0.965
Bra015322
AT1G04510 (E=5e-280) | transducin family protein / WD-40 repeat family protein (522 aa)
     
  0.965
Bra005504
AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase (525 aa)
     
  0.965
Bra037559
AT3G18790 (E=1e-024) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Isy1-like splicing (InterPro-IPR009360); Has 1075 Blast hits to 879 proteins in 176 species- Archae - 8; Bacteria - 11; Metazoa - 379; Fungi - 177; Plants - 27; Viruses - 9; Other Eukaryotes - 464 (source- NCBI BLink). (152 aa)
       
  0.941
Bra022357
AT3G18790 (E=4e-121) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Isy1-like splicing (InterPro-IPR009360); Has 1075 Blast hits to 879 proteins in 176 species- Archae - 8; Bacteria - 11; Metazoa - 379; Fungi - 177; Plants - 27; Viruses - 9; Other Eukaryotes - 464 (source- NCBI BLink). (297 aa)
       
  0.941
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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