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Bra009039 protein (Brassica rapa) - STRING interaction network
"Bra009039" - AT4G31700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009039AT4G31700 (E=4e-111) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (249 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
   
  0.999
Bra028814
AT5G64140 (E=1e-022) RPS28 | RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome (64 aa)
   
  0.999
Bra028814.1-P
AT5G64140 (E=1e-022) RPS28 | RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome (64 aa)
   
  0.999
Bra005784
AT3G10090 (E=7e-023) | 40S ribosomal protein S28 (RPS28A) (64 aa)
   
  0.999
Bra005784.1-P
AT3G10090 (E=7e-023) | 40S ribosomal protein S28 (RPS28A) (64 aa)
   
  0.999
Bra016647
AT2G32060 (E=9e-060) | 40S ribosomal protein S12 (RPS12C) (145 aa)
   
  0.999
Bra026092.1-P
AT2G32060 (E=2e-059) | 40S ribosomal protein S12 (RPS12C) (120 aa)
   
  0.999
Bra022878
AT2G32060 (E=1e-060) | 40S ribosomal protein S12 (RPS12C) (146 aa)
   
  0.999
Bra021773
AT2G32060 (E=4e-062) | 40S ribosomal protein S12 (RPS12C) (144 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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