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Bra009045 protein (Brassica rapa) - STRING interaction network
"Bra009045" - AT5G10270 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009045AT5G10270 (E=3e-212) CDKC;1 | CDKC;1 (Cyclin-dependent kinase C;1); kinase (509 aa)    
Predicted Functional Partners:
Bra030056
AT1G27630 (E=6e-161) CYCT1;3 | CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase (313 aa)
     
  0.976
Bra010927
AT1G27630 (E=5e-155) CYCT1;3 | CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase (320 aa)
     
  0.976
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
     
  0.973
Bra025087
AT5G45190 (E=5e-257) | cyclin family protein (567 aa)
     
  0.939
Bra021950
AT5G45190 (E=6e-239) | cyclin family protein (559 aa)
     
  0.939
Bra020954
AT4G19600 (E=7e-212) CYCT1;4 | CYCT1;4; cyclin-dependent protein kinase (527 aa)
     
  0.939
Bra013405
AT4G19610 (E=9e-294) | RNA binding / nucleic acid binding / nucleotide binding (1327 aa)
     
  0.936
Bra031514
AT4G19560 (E=6e-080) CYCT1;2 | CYCT1;2; cyclin-dependent protein kinase (316 aa)
     
  0.933
Bra013402
AT4G19560 (E=1e-115) CYCT1;2 | CYCT1;2; cyclin-dependent protein kinase (405 aa)
     
  0.933
Bra006723
AT1G35440 (E=1e-090) CYCT1;1 | CYCT1;1 (CYCLIN T1;1); cyclin-dependent protein kinase (264 aa)
     
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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