STRINGSTRING
80A08_17 protein (Brassica rapa) - STRING interaction network
"80A08_17" - AT5G10200 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
80A08_17AT5G10200 (E=0.0) | binding (631 aa)    
Predicted Functional Partners:
Bra018347
AT2G30010 (E=6e-202) | INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF231, plant (InterPro-IPR004253); BEST Arabidopsis thaliana protein match is- PMR5 (POWDERY MILDEW RESISTANT 5) (TAIR-AT5G58600.1); Has 709 Blast hits to 698 proteins in 16 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (400 aa)
           
  0.607
Bra028598
AT5G10150 (E=2e-083) | unknown protein (406 aa)
           
  0.499
Bra036596
AT5G26830 (E=0.0) | threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (707 aa)
           
  0.465
Bra028030
AT1G34040 (E=3e-191) | alliinase family protein (459 aa)
           
  0.465
Bra009922
AT5G26830 (E=0.0) | threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (718 aa)
           
  0.465
Bra002593
AT5G59200 (E=2e-273) | pentatricopeptide (PPR) repeat-containing protein (1003 aa)
           
  0.465
Bra018060
AT3G48430 (E=0.0) REF6 | REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (1385 aa)
     
   
  0.446
Bra009474
AT5G04240 (E=0.0) ELF6 | ELF6 (EARLY FLOWERING 6); transcription factor (1160 aa)
     
   
  0.432
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]