STRINGSTRING
Bra009060 protein (Brassica rapa) - STRING interaction network
"Bra009060" - AT5G10070 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009060AT5G10070 (E=1e-116) | RNase L inhibitor protein-related ; Probable pre-rRNA processing protein involved in ribosome biogenesis (296 aa)    
Predicted Functional Partners:
Bra020446
AT5G57370 (E=2e-050) | unknown protein (202 aa)
       
      0.737
Bra002732
AT5G57370 (E=2e-029) | unknown protein (197 aa)
       
      0.737
Bra035413
AT1G59990 (E=1e-261) | DEAD/DEAH box helicase, putative (RH22) (572 aa)
     
      0.628
Bra031019
AT3G06210 (E=5e-229) | binding (930 aa)
     
      0.628
Bra022952
AT2G33730 (E=2e-088) | DEAD box RNA helicase, putative (176 aa)
     
      0.628
Bra021872
AT2G33730 (E=8e-275) | DEAD box RNA helicase, putative (659 aa)
     
      0.628
Bra025165
AT3G25840 (E=2e-231) | protein kinase family protein (901 aa)
       
      0.619
Bra019827
AT1G13360 (E=2e-062) | unknown protein (185 aa)
       
      0.619
Bra017346
AT3G25840 (E=3e-277) | protein kinase family protein (890 aa)
       
      0.619
Bra016732
AT1G13360 (E=5e-040) | unknown protein (181 aa)
       
      0.619
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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