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80A08_2 protein (Brassica rapa) - STRING interaction network
"80A08_2" - AT5G10030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
80A08_2AT5G10030 (E=1e-187) TGA4, OBF4 | TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (364 aa)    
Predicted Functional Partners:
Bra006205
AT5G13530 (E=0.0) KEG | KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (1608 aa)
       
  0.441
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
       
  0.423
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
       
  0.419
Bra040211
AT3G04140 (E=5e-285) | ankyrin repeat family protein (665 aa)
       
  0.418
Bra040123
AT3G04710 (E=3e-205) | ankyrin repeat family protein (594 aa)
       
  0.418
Bra038714
AT3G12360 (E=6e-265) ITN1 | ITN1 (INCREASED TOLERANCE TO NACL); protein binding (577 aa)
       
  0.418
Bra037188
AT5G66055 (E=1e-091) EMB2036, AKRP | AKRP (ANKYRIN REPEAT PROTEIN); protein binding (193 aa)
       
  0.418
Bra035283
AT4G10720 (E=3e-062) | ankyrin repeat family protein (331 aa)
       
  0.418
Bra035261
AT4G11000 (E=8e-016) | ankyrin repeat family protein (81 aa)
       
  0.418
Bra034760
AT3G12360 (E=1e-289) ITN1 | ITN1 (INCREASED TOLERANCE TO NACL); protein binding (585 aa)
       
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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