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Bra009066 protein (Brassica rapa) - STRING interaction network
"Bra009066" - AT5G10000 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009066AT5G10000 (E=8e-032) ATFD4 | ATFD4 (ferredoxin 4); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (98 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
       
  0.965
Bra035720
AT4G32360 (E=2e-236) | NADP adrenodoxin-like ferredoxin reductase (932 aa)
       
  0.931
Bra029483
AT4G04080 (E=3e-050) ISU3, ATISU3 | ISU3 (ISCU-LIKE 3); structural molecule (115 aa)
   
  0.876
Bra020855
AT4G22220 (E=1e-084) ISU1, ATISU1 | ISU1; structural molecule ; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (164 aa)
   
  0.876
Bra013601
AT4G22220 (E=8e-084) ISU1, ATISU1 | ISU1; structural molecule ; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (159 aa)
   
  0.876
Bra038522
AT2G22450 (E=7e-237) | riboflavin biosynthesis protein, putative (481 aa)
       
    0.868
Bra037772
AT5G64300 (E=6e-230) ATGCH, GCH, ATRIBA1, RFD1 | ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (518 aa)
       
    0.868
Bra024283
AT5G64300 (E=2e-238) ATGCH, GCH, ATRIBA1, RFD1 | ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (530 aa)
       
    0.868
Bra020293
AT5G59750 (E=3e-246) | riboflavin biosynthesis protein, putative (499 aa)
       
    0.868
Bra037826
AT5G65720 (E=6e-222) ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase (457 aa)
   
  0.848
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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