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Bra009067 protein (Brassica rapa) - STRING interaction network
"Bra009067" - AT5G09995 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009067AT5G09995 (E=2e-097) | unknown protein (247 aa)    
Predicted Functional Partners:
Bra038081
AT4G15510 (E=4e-105) | photosystem II reaction center PsbP family protein (267 aa)
   
        0.514
Bra039542
AT4G15510 (E=2e-100) | photosystem II reaction center PsbP family protein (269 aa)
   
        0.503
Bra007852
AT1G59840 (E=2e-105) CCB4 | CCB4 (COFACTOR ASSEMBLY OF COMPLEX C) (299 aa)
   
          0.503
Bra007852.1-P
AT1G59840 (E=2e-105) CCB4 | CCB4 (COFACTOR ASSEMBLY OF COMPLEX C) (299 aa)
   
          0.503
Bra005759
AT5G02590 (E=4e-086) | chloroplast lumen common family protein (313 aa)
   
          0.500
Bra004504
AT2G46820 (E=6e-050) PTAC8, TMP14, PSAP, PSI-P | PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (183 aa)
   
          0.496
Bra015367
AT1G04940 (E=2e-133) TIC20 | TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20) (276 aa)
   
          0.493
Bra023116
AT2G37400 (E=4e-116) | chloroplast lumen common family protein (334 aa)
   
          0.487
Bra003145
AT3G53560 (E=4e-123) | chloroplast lumen common family protein (328 aa)
   
          0.486
Bra000947
AT4G01150 (E=5e-068) | unknown protein (164 aa)
   
          0.486
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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