STRINGSTRING
Bra009072 protein (Brassica rapa) - STRING interaction network
"Bra009072" - AT5G09930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009072AT5G09930 (E=3e-296) ATGCN2, GCN2 | ATGCN2; transporter (674 aa)    
Predicted Functional Partners:
Bra002185
AT3G06320 (E=1e-027) | ribosomal protein L33 family protein (58 aa)
     
      0.895
Bra002185.1-P
AT3G06320 (E=1e-027) | ribosomal protein L33 family protein (58 aa)
     
      0.895
Bra031113
AT1G76810 (E=2e-055) | eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (454 aa)
     
 
  0.798
Bra008506
AT1G64790 (E=0.0) | binding (2613 aa)
     
 
  0.770
Bra032841
AT1G27680 (E=2e-041) APL2 | APL2 (ADPGLC-PPASE LARGE SUBUNIT); glucose-1-phosphate adenylyltransferase (456 aa)
     
 
  0.671
Bra017243
AT3G13640 (E=6e-045) ATRLI1 | ATRLI1; transporter (757 aa)
     
 
  0.671
Bra013385
AT4G19210 (E=3e-223) ATRLI2, RLI2 | ATRLI2; transporter (581 aa)
     
 
  0.671
Bra012580
AT4G18730 (E=2e-093) RPL16B | RPL16B; structural constituent of ribosome (182 aa)
   
      0.654
Bra021990
AT4G18730 (E=7e-093) RPL16B | RPL16B; structural constituent of ribosome (182 aa)
   
      0.654
Bra017591
AT5G45775 (E=6e-079) | 60S ribosomal protein L11 (RPL11D) (178 aa)
   
      0.654
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]