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Bra009074 protein (Brassica rapa) - STRING interaction network
"Bra009074" - AT5G09900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009074AT5G09900 (E=2e-217) EMB2107, RPN5A, MSA | EMB2107 (EMBRYO DEFECTIVE 2107) (422 aa)    
Predicted Functional Partners:
Bra016472
AT1G76010 (E=6e-061) | nucleic acid binding (645 aa)
     
  0.999
Bra012219
AT1G76010 (E=1e-035) | nucleic acid binding (214 aa)
     
  0.999
Bra019207
AT4G24820 (E=5e-208) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.999
Bra013838
AT4G24820 (E=8e-209) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.999
Bra015799
AT1G75990 (E=3e-224) | 26S proteasome regulatory subunit S3, putative (RPN3) (482 aa)
     
  0.998
Bra025066
AT5G45620 (E=2e-201) | 26S proteasome regulatory subunit, putative (RPN9) (386 aa)
     
  0.996
Bra020980
AT4G19006 (E=4e-201) | 26S proteasome regulatory subunit, putative (RPN9) (386 aa)
     
  0.996
Bra040569
AT1G53750 (E=3e-238) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (433 aa)
     
  0.996
Bra039688
AT1G53750 (E=5e-247) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (426 aa)
     
  0.996
Bra030922
AT1G53750 (E=3e-243) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (426 aa)
     
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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