STRINGSTRING
Bra009076 protein (Brassica rapa) - STRING interaction network
"Bra009076" - AT5G09880 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009076AT5G09880 (E=2e-174) | RNA recognition motif (RRM)-containing protein (538 aa)    
Predicted Functional Partners:
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
     
      0.913
Bra027160
AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (236 aa)
     
      0.913
Bra019993
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (844 aa)
     
      0.913
Bra030575
AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein (574 aa)
     
      0.911
Bra021844
AT2G33340 (E=3e-236) | nucleotide binding / ubiquitin-protein ligase (442 aa)
     
      0.911
Bra015322
AT1G04510 (E=5e-280) | transducin family protein / WD-40 repeat family protein (522 aa)
     
      0.911
Bra005504
AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase (525 aa)
     
      0.911
Bra014095
AT5G17900 (E=4e-084) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- extracellular region; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G08580.1); Has 36643 Blast hits to 21191 proteins in 1090 species- Archae - 183; Bacteria - 2726; Metazoa - 17629; Fungi - 3036; Plants - 994; Viruses - 215; Other Eukaryotes - 11860 (source- NCBI BLink). (309 aa)
     
      0.910
Bra012173
AT4G08580 (E=9e-077) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G17900.1); Has 39042 Blast hits to 22601 proteins in 1140 species- Archae - 179; Bacteria - 2955; Metazoa - 18595; Fungi - 3264; Plants - 1100; Viruses - 245; Other Eukaryotes - 12704 (sou [...] (432 aa)
     
      0.910
Bra006427
AT5G17900 (E=9e-119) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- extracellular region; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G08580.1); Has 36643 Blast hits to 21191 proteins in 1090 species- Archae - 183; Bacteria - 2726; Metazoa - 17629; Fungi - 3036; Plants - 994; Viruses - 215; Other Eukaryotes - 11860 (source- NCBI BLink). (429 aa)
     
      0.910
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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