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Bra009089 protein (Brassica rapa) - STRING interaction network
"Bra009089" - AT5G05130 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009089AT5G05130 (E=9e-271) | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (836 aa)    
Predicted Functional Partners:
Bra025107
AT5G44740 (E=1e-202) POLH | POLH (Y-FAMILT DNA POLYMERASE H); DNA-directed DNA polymerase (691 aa)
     
 
  0.951
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
       
 
  0.948
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
       
 
  0.948
Bra019188
AT4G25120 (E=4e-300) | ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase (1140 aa)
     
 
  0.946
Bra004185
AT1G66730 (E=9e-181) | ATP dependent DNA ligase family protein (1082 aa)
     
 
  0.944
Bra003000
AT5G54260 (E=0.0) MRE11, ATMRE11 | MRE11 (meiotic recombination 11); endonuclease/ exonuclease/ hydrolase/ manganese ion binding / protein serine/threonine phosphatase (709 aa)
       
 
  0.921
Bra034416
AT1G35530 (E=2e-284) | DEAD/DEAH box helicase, putative (1331 aa)
     
 
  0.917
Bra025106
AT5G44750 (E=0.0) REV1, ATREV1 | REV1; DNA-directed DNA polymerase (1104 aa)
     
 
  0.803
Bra018821
AT1G49980 (E=1e-296) | DNA-directed DNA polymerase/ damaged DNA binding (680 aa)
     
 
  0.798
Bra037089
AT3G52560 (E=1e-059) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (184 aa)
     
 
  0.795
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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