STRINGSTRING
Bra009093 protein (Brassica rapa) - STRING interaction network
"Bra009093" - AT5G05190 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009093AT5G05190 (E=2e-121) | unknown protein (575 aa)    
Predicted Functional Partners:
Bra021277
AT3G17840 (E=1e-149) RLK902 | RLK902; ATP binding / kinase/ protein serine/threonine kinase (632 aa)
       
      0.615
Bra014140
AT1G48480 (E=3e-254) RKL1 | RKL1; ATP binding / kinase/ protein serine/threonine kinase (638 aa)
       
      0.615
Bra004639
AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (521 aa)
       
      0.613
Bra000234
AT2G41680 (E=3e-246) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (511 aa)
       
      0.613
Bra039158
AT3G02150 (E=2e-101) PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor (309 aa)
       
      0.489
Bra034827
AT3G11590 (E=8e-252) | unknown protein (614 aa)
       
      0.489
Bra033505
AT4G15730 (E=5e-220) | zinc ion binding (936 aa)
       
      0.489
Bra026236
AT4G17220 (E=3e-193) ATMAP70-5 | ATMAP70-5 (microtubule-associated proteins 70-5); microtubule binding (497 aa)
       
      0.489
Bra020076
AT5G19960 (E=9e-124) | RNA recognition motif (RRM)-containing protein (323 aa)
       
      0.489
Bra008611
AT5G16590 (E=1e-250) LRR1 | LRR1; ATP binding / kinase/ protein serine/threonine kinase (617 aa)
       
      0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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