STRINGSTRING
Bra009097 protein (Brassica rapa) - STRING interaction network
"Bra009097" - AT5G05230 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009097AT5G05230 (E=2e-140) | ubiquitin-protein ligase (360 aa)    
Predicted Functional Partners:
Bra034794
AT1G55310 (E=2e-024) SR33, ATSCL33, SCL33 | SR33; RNA binding / protein binding (207 aa)
           
  0.499
Bra024538
AT1G22800 (E=6e-177) | methyltransferase (356 aa)
           
  0.499
Bra001229
AT3G07020 (E=6e-309) | UDP-glucose-sterol glucosyltransferase (UGT80A2) (632 aa)
           
  0.499
Bra040355
AT3G07020 (E=1e-287) | UDP-glucose-sterol glucosyltransferase (UGT80A2) (638 aa)
           
  0.465
Bra021874
AT2G33770 (E=7e-223) UBC24, ATUBC24, PHO2 | PHO2 (PHOSPHATE 2); ubiquitin-protein ligase (865 aa)
           
  0.410
Bra012344
AT1G22800 (E=8e-045) | methyltransferase (145 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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