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Bra009101 protein (Brassica rapa) - STRING interaction network
"Bra009101" - AT5G05270 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009101AT5G05270 (E=2e-069) | chalcone-flavanone isomerase family protein (205 aa)    
Predicted Functional Partners:
Bra009312
AT5G07990 (E=4e-244) TT7, CYP75B1, D501 | TT7 (TRANSPARENT TESTA 7); flavonoid 3’-monooxygenase/ oxygen binding (511 aa)
     
   
  0.511
Bra008792
AT5G13930 (E=4e-219) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (395 aa)
     
   
  0.496
Bra006224
AT5G13930 (E=2e-216) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (396 aa)
     
   
  0.496
Bra035455
AT1G58230 (E=0.0) | WD-40 repeat family protein / beige-related (2624 aa)
           
  0.476
Bra024000
AT4G31530 (E=4e-121) | binding / catalytic (330 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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