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Bra009112 protein (Brassica rapa) - STRING interaction network
"Bra009112" - AT5G05410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009112AT5G05410 (E=9e-073) DREB2A, DREB2 | DREB2A; DNA binding / transcription activator/ transcription factor (330 aa)    
Predicted Functional Partners:
Bra040191
AT3G04480 (E=0.0) | endoribonuclease (712 aa)
       
      0.585
Bra001106
AT3G04480 (E=0.0) | endoribonuclease (719 aa)
       
      0.585
Bra040260
AT1G45249 (E=5e-081) ABF2, AREB1 | ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2); DNA binding / protein binding / transcription activator/ transcription factor (364 aa)
       
 
  0.479
Bra037533
AT3G19290 (E=3e-066) ABF4, AREB2 | ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (388 aa)
       
 
  0.479
Bra011485
AT4G34000 (E=1e-063) ABF3, DPBF5 | ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription activator/ transcription factor (439 aa)
       
 
  0.479
Bra001742
AT1G49720 (E=2e-100) ABF1 | ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor (355 aa)
       
 
  0.479
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
       
      0.440
Bra024737
AT1G25540 (E=0.0) PFT1 | PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator (902 aa)
       
 
  0.412
Bra011001
AT1G25540 (E=3e-301) PFT1 | PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator (832 aa)
       
 
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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