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Bra009114 protein (Brassica rapa) - STRING interaction network
"Bra009114" - AT5G05450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009114AT5G05450 (E=2e-266) | DEAD/DEAH box helicase, putative (RH18) (595 aa)    
Predicted Functional Partners:
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.997
Bra036641
AT3G16810 (E=3e-022) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding (118 aa)
     
      0.996
Bra022180
AT3G16810 (E=1e-261) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding (643 aa)
     
      0.996
Bra003691
AT1G77030 (E=6e-286) | ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (852 aa)
   
 
0.990
Bra038492
AT4G16630 (E=5e-153) | DEAD/DEAH box helicase, putative (RH28) (908 aa)
   
 
0.988
Bra040743
AT4G16630 (E=2e-266) | DEAD/DEAH box helicase, putative (RH28) (874 aa)
   
 
0.988
Bra035095
AT1G79150 (E=0.0) | binding (835 aa)
     
      0.984
Bra003620
AT1G79150 (E=5e-030) | binding (163 aa)
     
      0.984
Bra038067
AT4G15770 (E=6e-098) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.984
Bra033510
AT4G15770 (E=1e-097) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.984
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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