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Bra009116 protein (Brassica rapa) - STRING interaction network
"Bra009116" - AT5G05500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009116AT5G05500 (E=7e-083) | pollen Ole e 1 allergen and extensin family protein (185 aa)    
Predicted Functional Partners:
Bra009422
AT5G04850 (E=6e-110) VPS60.2 | VPS60.2 (240 aa)
           
  0.519
Bra005823
AT5G04850 (E=1e-110) VPS60.2 | VPS60.2 (238 aa)
           
  0.519
Bra018560
AT4G02270 (E=2e-073) | pollen Ole e 1 allergen and extensin family protein (165 aa)
     
   
  0.496
Bra001371
AT3G10640 (E=7e-106) VPS60.1 | VPS60.1 (234 aa)
           
  0.493
Bra005832
AT5G04960 (E=1e-252) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (570 aa)
     
   
  0.488
Bra029001
AT5G54940 (E=1e-054) | eukaryotic translation initiation factor SUI1, putative (112 aa)
           
  0.410
Bra002944
AT5G54940 (E=9e-055) | eukaryotic translation initiation factor SUI1, putative (232 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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