STRINGSTRING
Bra009117 protein (Brassica rapa) - STRING interaction network
"Bra009117" - AT5G05510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009117AT5G05510 (E=1e-091) | protein kinase-related (453 aa)    
Predicted Functional Partners:
Bra013534
AT4G21530 (E=0.0) | nucleotide binding (773 aa)
     
    0.997
Bra015658
AT1G77720 (E=1e-260) | protein kinase family protein (671 aa)
     
 
  0.990
Bra003671
AT1G77720 (E=3e-287) | protein kinase family protein (740 aa)
     
 
  0.990
Bra037054
AT4G33270 (E=2e-024) CDC20.1 | CDC20.1; signal transducer (63 aa)
     
  0.989
Bra037011
AT4G33270 (E=4e-199) CDC20.1 | CDC20.1; signal transducer (419 aa)
     
  0.989
Bra034555
AT4G33270 (E=7e-101) CDC20.1 | CDC20.1; signal transducer (379 aa)
     
  0.989
Bra011430
AT4G33270 (E=1e-249) CDC20.1 | CDC20.1; signal transducer (715 aa)
     
  0.989
Bra008327
AT4G33260 (E=3e-153) CDC20.2 | CDC20.2; signal transducer (428 aa)
     
  0.989
Bra005544
AT4G33260 (E=9e-181) CDC20.2 | CDC20.2; signal transducer (439 aa)
     
  0.989
Bra015240
AT2G33560 (E=2e-071) | spindle checkpoint protein-related (232 aa)
     
  0.989
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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