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Bra009118 protein (Brassica rapa) - STRING interaction network
"Bra009118" - AT5G05520 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009118AT5G05520 (E=2e-233) | outer membrane OMP85 family protein (527 aa)    
Predicted Functional Partners:
Bra035524
AT5G35930 (E=2e-238) | AMP-dependent synthetase and ligase family protein (1062 aa)
     
 
  0.928
Bra038249
AT3G20000 (E=5e-152) TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel (310 aa)
     
  0.841
Bra035826
AT3G20000 (E=8e-151) TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel (309 aa)
     
  0.841
Bra018846
AT1G50400 (E=5e-052) | porin family protein (320 aa)
     
  0.841
Bra038838
AT2G19080 (E=4e-036) | metaxin-related (231 aa)
     
  0.774
Bra038562
AT2G19080 (E=2e-124) | metaxin-related (314 aa)
     
  0.774
Bra015286
AT1G04070 (E=9e-031) TOM22-I, ATTOM22-I | TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I); P-P-bond-hydrolysis-driven protein transmembrane transporter (96 aa)
     
 
  0.728
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
 
  0.672
Bra020036
AT5G19370 (E=2e-062) | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (301 aa)
   
 
  0.662
Bra041055
ATCG01090 (E=2e-075) NDHI | Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex ; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (172 aa)
   
      0.648
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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