STRINGSTRING
Bra009119 protein (Brassica rapa) - STRING interaction network
"Bra009119" - AT5G05550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009119AT5G05550 (E=2e-078) | transcription factor (251 aa)    
Predicted Functional Partners:
Bra001384
AT3G10986 (E=7e-055) | unknown protein (123 aa)
           
  0.606
Bra003745
AT4G40030 (E=4e-072) | histone H3.2 (136 aa)
       
 
  0.543
Bra017269
AT2G36000 (E=1e-126) | mitochondrial transcription termination factor-related / mTERF-related (331 aa)
           
  0.477
Bra000207
AT2G40830 (E=3e-095) RHC1A | RHC1A; protein binding / zinc ion binding (317 aa)
           
  0.477
Bra040757
AT4G12790 (E=9e-145) | ATP-binding family protein (269 aa)
           
  0.455
Bra012832
AT3G51880 (E=4e-021) HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (159 aa)
     
   
  0.415
Bra038733
AT3G12570 (E=2e-257) FYD | FYD (490 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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