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Bra009120 protein (Brassica rapa) - STRING interaction network
"Bra009120" - AT5G05570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009120AT5G05570 (E=3e-293) | transducin family protein / WD-40 repeat family protein (1088 aa)    
Predicted Functional Partners:
Bra039622
AT2G18260 (E=4e-112) SYP112, ATSYP112 | SYP112 (SYNTAXIN OF PLANTS 112); SNAP receptor (288 aa)
       
 
  0.626
Bra036431
AT3G03800 (E=6e-062) SYP131, ATSYP131 | SYP131 (SYNTAXIN OF PLANTS 131); SNAP receptor (278 aa)
       
 
  0.626
Bra034808
AT3G11820 (E=5e-080) SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, PEN1 | SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchor (325 aa)
       
 
  0.626
Bra034202
AT4G03330 (E=8e-151) SYP123, ATSYP123 | SYP123 (SYNTAXIN OF PLANTS 123); SNAP receptor (305 aa)
       
 
  0.626
Bra033436
AT3G52400 (E=6e-134) SYP122, ATSYP122 | SYP122 (SYNTAXIN OF PLANTS 122); SNAP receptor (342 aa)
       
 
  0.626
Bra031972
AT3G03800 (E=2e-076) SYP131, ATSYP131 | SYP131 (SYNTAXIN OF PLANTS 131); SNAP receptor (280 aa)
       
 
  0.626
Bra031761
AT1G11250 (E=4e-075) SYP125, ATSYP125 | SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor (165 aa)
       
 
  0.626
Bra031760
AT1G11250 (E=3e-041) SYP125, ATSYP125 | SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor (104 aa)
       
 
  0.626
Bra031759
AT1G11250 (E=5e-140) SYP125, ATSYP125 | SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor (298 aa)
       
 
  0.626
Bra030733
AT1G08560 (E=9e-128) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (304 aa)
       
 
  0.626
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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