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Bra009123 protein (Brassica rapa) - STRING interaction network
"Bra009123" - AT5G05660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009123AT5G05660 (E=0.0) ATNFXL2 | ATNFXL2; protein binding / transcription factor/ zinc ion binding (883 aa)    
Predicted Functional Partners:
Bra037775
AT5G64350 (E=3e-048) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
       
      0.849
Bra024287
AT5G64350 (E=1e-055) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
       
      0.849
Bra031676
AT1G09640 (E=9e-204) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
       
 
  0.622
Bra030790
AT1G57720 (E=6e-190) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (566 aa)
       
 
  0.622
Bra020005
AT1G09640 (E=4e-193) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
       
 
  0.622
Bra002264
AT5G19850 (E=3e-175) | hydrolase, alpha/beta fold family protein (375 aa)
           
  0.543
Bra021918
AT2G34520 (E=1e-048) RPS14 | RPS14 (mitochondrial ribosomal protein S14); structural constituent of ribosome (151 aa)
       
      0.514
Bra005418
AT2G34520 (E=2e-049) RPS14 | RPS14 (mitochondrial ribosomal protein S14); structural constituent of ribosome (154 aa)
       
      0.514
Bra029807
AT3G09930 (E=1e-150) | GDSL-motif lipase/hydrolase family protein (323 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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