STRINGSTRING
Bra009125 protein (Brassica rapa) - STRING interaction network
"Bra009125" - AT5G05680 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra009125AT5G05680 (E=0.0) | nuclear pore complex protein-related (812 aa)    
Predicted Functional Partners:
Bra004882
AT2G45000 (E=1e-107) EMB2766 | EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore (784 aa)
     
  0.992
Bra023593
AT5G17020 (E=0.0) XPO1A, ATCRM1, ATXPO1, XPO1 | XPO1A; protein binding / protein transporter/ receptor (1088 aa)
     
  0.956
Bra015851
AT1G75340 (E=1e-081) | zinc finger (CCCH-type) family protein (398 aa)
       
      0.905
Bra027371
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1072 aa)
     
  0.895
Bra021532
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1069 aa)
     
  0.895
Bra013073
AT3G14120 (E=6e-167) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (473 aa)
     
  0.890
Bra011395
AT4G32910 (E=0.0) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nucleoporin, Nup85-like (InterPro-IPR011502); Has 161 Blast hits to 158 proteins in 60 species- Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 10; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (722 aa)
     
  0.850
Bra029733
AT3G08943 (E=0.0) | binding / protein transporter (872 aa)
     
  0.842
Bra003054
AT5G53480 (E=0.0) | importin beta-2, putative (868 aa)
     
  0.831
Bra037036
AT4G32915 (E=1e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (142 aa)
     
  0.827
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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