STRINGSTRING
Bra009132 protein (Brassica rapa) - STRING interaction network
"Bra009132" - AT3G11260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009132AT3G11260 (E=4e-058) WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor (192 aa)    
Predicted Functional Partners:
Bra000375
AT2G45160 (E=8e-236) | scarecrow transcription factor family protein (607 aa)
       
      0.612
Bra023385
AT5G12990 (E=4e-021) CLE40 | CLE40 (CLAVATA3/ESR-RELATED 40); protein binding / receptor binding (84 aa)
           
  0.541
Bra008865
AT5G12990 (E=1e-020) CLE40 | CLE40 (CLAVATA3/ESR-RELATED 40); protein binding / receptor binding (82 aa)
           
  0.541
Bra034340
AT2G27250 (E=1e-022) CLV3 | CLV3 (CLAVATA3); kinase activator/ protein binding / receptor binding (77 aa)
           
  0.497
Bra017842
AT4G37650 (E=5e-243) SHR, SGR7 | SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor (532 aa)
           
  0.457
Bra011777
AT4G37650 (E=5e-247) SHR, SGR7 | SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor (533 aa)
           
  0.457
Bra025456
AT5G41920 (E=1e-117) | scarecrow transcription factor family protein (246 aa)
           
  0.428
Bra007056
AT3G54220 (E=2e-180) SCR, SGR1 | SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (316 aa)
           
  0.428
Bra023738
AT3G23290 (E=4e-072) LSH4 | LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4) (176 aa)
           
  0.426
Bra021707
AT2G31160 (E=7e-083) LSH3 | LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) (217 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]