STRINGSTRING
Bra009134 protein (Brassica rapa) - STRING interaction network
"Bra009134" - AT5G05790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009134AT5G05790 (E=1e-126) | myb family transcription factor (270 aa)    
Predicted Functional Partners:
Bra027089
AT1G61370 (E=0.0) | S-locus lectin protein kinase family protein (1602 aa)
           
  0.666
Bra039022
AT2G19810 (E=6e-143) | zinc finger (CCCH-type) family protein (357 aa)
           
  0.546
Bra034950
AT3G42790 (E=6e-097) AL3 | AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding (254 aa)
           
  0.537
Bra026363
AT4G27290 (E=2e-204) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (828 aa)
           
  0.509
Bra019059
AT4G27290 (E=1e-194) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (818 aa)
           
  0.509
Bra013522
AT4G21380 (E=0.0) ARK3 | ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase (846 aa)
           
  0.509
Bra024157
AT4G29190 (E=6e-156) | zinc finger (CCCH-type) family protein (349 aa)
           
  0.461
Bra011087
AT4G29190 (E=7e-159) | zinc finger (CCCH-type) family protein (361 aa)
           
  0.461
Bra010334
AT4G29190 (E=1e-148) | zinc finger (CCCH-type) family protein (352 aa)
           
  0.461
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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