STRINGSTRING
Bra009138 protein (Brassica rapa) - STRING interaction network
"Bra009138" - AT5G05830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009138AT5G05830 (E=1e-079) | zinc finger (C3HC4-type RING finger) family protein (199 aa)    
Predicted Functional Partners:
Bra027730
AT1G64460 (E=3e-149) | phosphatidylinositol 3- and 4-kinase family protein (533 aa)
     
  0.805
Bra027702
AT1G64460 (E=3e-155) | phosphatidylinositol 3- and 4-kinase family protein (498 aa)
     
  0.805
Bra026464
AT5G24240 (E=6e-180) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (466 aa)
     
  0.805
Bra006947
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.805
Bra012402
AT5G24240 (E=9e-242) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (1162 aa)
     
  0.805
Bra009742
AT5G24240 (E=1e-274) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.805
Bra006947.1-P
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.805
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
     
 
  0.792
Bra003519
AT3G63000 (E=2e-024) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (89 aa)
     
 
  0.792
Bra037393
AT4G01000 (E=1e-117) | ubiquitin family protein (419 aa)
     
  0.788
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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