STRINGSTRING
Bra009155 protein (Brassica rapa) - STRING interaction network
"Bra009155" - AT5G05970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009155AT5G05970 (E=1e-297) NEDD1 | NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1); nucleotide binding (729 aa)    
Predicted Functional Partners:
Bra007026
AT3G53760 (E=0.0) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (1000 aa)
     
  0.933
Bra013980
AT5G17410 (E=1e-074) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (541 aa)
     
  0.894
Bra006406
AT5G17410 (E=6e-242) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (606 aa)
     
  0.894
Bra008485
AT1G80260 (E=0.0) emb1427 | emb1427 (embryo defective 1427); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (1088 aa)
     
    0.878
Bra028722
AT5G06680 (E=4e-286) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (611 aa)
     
  0.824
Bra018111
AT3G43610 (E=0.0) | tubulin binding (1214 aa)
     
  0.824
Bra009216
AT5G06680 (E=5e-099) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (643 aa)
     
  0.824
Bra007622
AT3G61650 (E=2e-273) TUBG1 | TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule ; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (473 aa)
     
  0.712
Bra037482
AT5G48520 (E=9e-286) | unknown protein (650 aa)
     
 
  0.604
Bra000226
AT2G41350 (E=5e-144) | unknown protein (298 aa)
     
 
  0.570
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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