STRINGSTRING
Bra009166 protein (Brassica rapa) - STRING interaction network
"Bra009166" - AT5G06140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009166AT5G06140 (E=2e-206) SNX1, ATSNX1 | SNX1 (SORTING NEXIN 1); phosphoinositide binding / protein binding (390 aa)    
Predicted Functional Partners:
Bra019514
AT3G47810 (E=8e-103) MAG1, VPS29, ATVPS29 | MAG1 (MAIGO 1); hydrolase/ protein serine/threonine phosphatase (190 aa)
     
  0.971
Bra018110
AT3G47810 (E=5e-103) MAG1, VPS29, ATVPS29 | MAG1 (MAIGO 1); hydrolase/ protein serine/threonine phosphatase (190 aa)
     
  0.971
Bra026315
AT4G27690 (E=3e-170) VPS26B | VPS26B (VACUOLAR PROTEIN SORTING 26B) (303 aa)
     
  0.967
Bra022659
AT5G53530 (E=5e-087) VPS26A | VPS26A (VACUOLAR PROTEIN SORTING 26A) (343 aa)
     
  0.967
Bra003049
AT5G53530 (E=3e-167) VPS26A | VPS26A (VACUOLAR PROTEIN SORTING 26A) (302 aa)
     
  0.967
Bra036818
AT3G51310 (E=0.0) VPS35C | VPS35C (VPS35 HOMOLOG C) ; Plays a role in vesicular protein sorting (793 aa)
     
  0.967
Bra015806
AT1G75850 (E=6e-248) VPS35B | VPS35B (VPS35 HOMOLOG B) ; Plays a role in vesicular protein sorting (807 aa)
     
  0.967
Bra002092
AT2G17790 (E=0.0) VPS35A | VPS35A (VPS35 HOMOLOG A) ; Plays a role in vesicular protein sorting (788 aa)
     
  0.967
Bra013410
AT4G19640 (E=1e-105) ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | ARA7; GTP binding (200 aa)
     
  0.833
Bra000739
AT4G11220 (E=4e-126) BTI2 | BTI2 (VIRB2-INTERACTING PROTEIN 2) (267 aa)
     
      0.825
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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