STRINGSTRING
Bra009168 protein (Brassica rapa) - STRING interaction network
"Bra009168" - AT5G06180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009168AT5G06180 (E=2e-194) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF1022 (InterPro-IPR009367); BEST Arabidopsis thaliana protein match is- ELM1 (ELONGATED MITOCHONDRIA 1) (TAIR-AT5G22350.1); Has 1314 Blast hits to 1313 proteins in 81 species- Archae - 0; Bacteria - 151; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 1132 (source- NCBI BLink). (414 aa)    
Predicted Functional Partners:
Bra036991
AT4G33650 (E=0.0) ADL2, DRP3A | DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding (807 aa)
           
  0.477
Bra011458
AT4G33650 (E=0.0) ADL2, DRP3A | DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding (807 aa)
           
  0.477
Bra007301
AT3G57090 (E=1e-061) BIGYIN, FIS1A | BIGYIN; binding (170 aa)
           
  0.474
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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