STRINGSTRING
Bra009169 protein (Brassica rapa) - STRING interaction network
"Bra009169" - AT3G11560 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Experiments
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[Homology]
Score
Bra009169AT3G11560 (E=2e-197) | LOCATED IN- chloroplast, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LETM1-like (InterPro-IPR011685); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G06220.1); Has 320 Blast hits to 313 proteins in 106 species- Archae - 0; Bacteria - 8; Metazoa - 121; Fungi - 108; Plants - 51; Viruses - 0; Other Eukaryotes - 32 (source- NCBI BLink). (852 aa)    
Predicted Functional Partners:
Bra036845
AT3G50950 (E=0.0) | disease resistance protein (CC-NBS-LRR class), putative (1291 aa)
     
 
  0.437
Bra030522
AT1G03160 (E=0.0) FZL | FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase (909 aa)
     
   
  0.430
Bra011319
AT4G32060 (E=6e-221) | calcium-binding EF hand family protein (494 aa)
           
  0.405
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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