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Bra009173 protein (Brassica rapa) - STRING interaction network
"Bra009173" - AT5G06265 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009173AT5G06265 (E=2e-033) | hyaluronan mediated motility receptor-related (105 aa)    
Predicted Functional Partners:
Bra016502
AT1G19580 (E=2e-135) GAMMA CA1 | GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase (269 aa)
           
  0.478
Bra014562
AT3G58610 (E=1e-289) | ketol-acid reductoisomerase (589 aa)
           
  0.452
Bra007404
AT3G58610 (E=5e-289) | ketol-acid reductoisomerase (586 aa)
           
  0.452
Bra003345
AT3G58610 (E=1e-286) | ketol-acid reductoisomerase (589 aa)
           
  0.452
Bra014473
AT3G60750 (E=0.0) | transketolase, putative (735 aa)
           
  0.410
Bra007555
AT3G60750 (E=0.0) | transketolase, putative (738 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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