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Bra009178 protein (Brassica rapa) - STRING interaction network
"Bra009178" - AT5G06270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009178AT5G06270 (E=8e-038) | unknown protein (123 aa)    
Predicted Functional Partners:
Bra020977
AT4G19110 (E=3e-235) | protein kinase, putative (461 aa)
           
  0.483
Bra012558
AT4G19110 (E=2e-231) | protein kinase, putative (1325 aa)
           
  0.483
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
           
  0.474
Bra030298
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (921 aa)
           
  0.474
Bra025077
AT5G45430 (E=6e-166) | protein kinase, putative (432 aa)
           
  0.408
Bra017602
AT4G19110 (E=2e-187) | protein kinase, putative (567 aa)
           
  0.408
Bra024186
AT4G28700 (E=1e-224) AMT1;4 | AMT1;4 (AMMONIUM TRANSPORTER 1;4); ammonium transmembrane transporter/ high affinity secondary active ammonium transmembrane transporter (509 aa)
           
  0.406
Bra011051
AT4G28700 (E=4e-232) AMT1;4 | AMT1;4 (AMMONIUM TRANSPORTER 1;4); ammonium transmembrane transporter/ high affinity secondary active ammonium transmembrane transporter (501 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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