STRINGSTRING
Bra009180 protein (Brassica rapa) - STRING interaction network
"Bra009180" - AT5G06280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009180AT5G06280 (E=2e-040) | unknown protein (153 aa)    
Predicted Functional Partners:
Bra011653
AT4G35987 (E=7e-146) | unknown protein (305 aa)
           
  0.607
Bra016106
AT1G71850 (E=2e-181) | ubiquitin thiolesterase (481 aa)
           
  0.605
Bra016106.1-P
AT1G71850 (E=2e-181) | ubiquitin thiolesterase (481 aa)
           
  0.605
Bra017741
AT4G35985 (E=1e-177) | senescence/dehydration-associated protein-related (437 aa)
           
  0.489
Bra017421
AT2G02130 (E=9e-039) PDF2.3, LCR68 | LCR68 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68); peptidase inhibitor (77 aa)
           
  0.471
Bra034824
AT3G11630 (E=7e-113) | 2-cys peroxiredoxin, chloroplast (BAS1) (261 aa)
           
  0.461
Bra009181
AT5G06290 (E=1e-118) 2-Cys Prx B | 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (269 aa)
           
  0.461
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]