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Bra009183 protein (Brassica rapa) - STRING interaction network
"Bra009183" - AT5G06310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009183AT5G06310 (E=4e-215) AtPOT1b | AtPOT1b (protection of telomeres 1b); DNA binding (454 aa)    
Predicted Functional Partners:
Bra018818
AT1G49950 (E=2e-111) TRB1, ATTRB1 | DNA-binding protein, putative (351 aa)
       
 
  0.925
Bra029978
AT3G49850 (E=2e-070) TRB3, ATTRB3, TBP2 | TRB3 (TELOMERE REPEAT BINDING FACTOR 3); DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (222 aa)
       
 
  0.920
Bra026012
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding (577 aa)
       
 
  0.851
Bra011920
AT1G55520 (E=8e-107) TBP2, ATTBP2 | TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding (200 aa)
       
      0.829
Bra008588
AT5G16850 (E=0.0) ATTERT | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE); telomerase/ telomeric template RNA reverse transcriptase (1165 aa)
       
 
  0.828
Bra039650
AT1G49950 (E=1e-104) TRB1, ATTRB1 | DNA-binding protein, putative (310 aa)
       
 
  0.790
Bra037839
AT5G67580 (E=1e-083) TRB2, ATTRB2, TBP3, ATTBP3 | TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (294 aa)
       
 
  0.758
Bra024438
AT5G67580 (E=1e-096) TRB2, ATTRB2, TBP3, ATTBP3 | TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (287 aa)
       
 
  0.758
Bra030114
AT1G29040 (E=2e-071) | unknown protein (187 aa)
       
 
  0.737
Bra012158
AT5G67385 (E=2e-283) | protein binding / signal transducer (601 aa)
       
 
  0.718
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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