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Bra009186 protein (Brassica rapa) - STRING interaction network
"Bra009186" - AT5G06340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009186AT5G06340 (E=2e-056) ATNUDX27 | ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27); bis(5’-adenosyl)-pentaphosphatase/ bis(5’-nucleosyl)-tetraphosphatase (asymmetrical) (238 aa)    
Predicted Functional Partners:
Bra038355
AT1G68760 (E=3e-064) ATNUDT1, ATNUDX1 | ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1); dihydroneopterin triphosphate pyrophosphohydrolase/ hydrolase (144 aa)
           
  0.582
Bra025222
AT3G26690 (E=4e-090) ATNUDT13, ATNUDX13 | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13); bis(5’-adenosyl)-pentaphosphatase/ hydrolase (199 aa)
           
  0.581
Bra019796
AT1G12880 (E=2e-073) atnudt12 | atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase (215 aa)
           
  0.541
Bra010854
AT1G28960 (E=7e-124) ATNUDT15, ATNUDX15 | ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase (270 aa)
           
  0.505
Bra020083
AT5G20070 (E=1e-202) ATNUDT19, ATNUDX19 | ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19); hydrolase/ metal ion binding (402 aa)
           
  0.503
Bra022001
AT5G45940 (E=1e-093) atnudt11 | atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11); hydrolase (221 aa)
           
  0.502
Bra032941
AT3G26690 (E=8e-094) ATNUDT13, ATNUDX13 | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13); bis(5’-adenosyl)-pentaphosphatase/ hydrolase (199 aa)
           
  0.483
Bra038736
AT3G12600 (E=6e-078) atnudt16 | atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase (176 aa)
           
  0.474
Bra034750
AT3G12600 (E=4e-080) atnudt16 | atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase (173 aa)
           
  0.474
Bra029428
AT4G11980 (E=1e-133) ATNUDT14, ATNUDX14 | ATNUDX14 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14); ADP-glucose pyrophosphohydrolase/ ADP-ribose pyrophosphohydrolase/ ADP-sugar diphosphatase/ hydrolase (306 aa)
           
  0.473
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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