STRINGSTRING
Bra009187 protein (Brassica rapa) - STRING interaction network
"Bra009187" - AT5G27010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009187AT5G27010 (E=0.0) | binding (878 aa)    
Predicted Functional Partners:
Bra029937
AT3G49180 (E=9e-178) RID3 | RID3 (ROOT INITIATION DEFECTIVE 3); nucleotide binding (437 aa)
     
  0.985
Bra018002
AT3G49180 (E=5e-097) RID3 | RID3 (ROOT INITIATION DEFECTIVE 3); nucleotide binding (358 aa)
     
  0.983
Bra019003
AT1G52980 (E=3e-247) | GTP-binding family protein (582 aa)
     
 
  0.976
Bra008997
AT5G11010 (E=1e-171) | pre-mRNA cleavage complex-related (368 aa)
     
  0.970
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
     
  0.953
Bra012490
AT1G25260 (E=7e-111) | acidic ribosomal protein P0-related (229 aa)
     
  0.953
Bra010982
AT1G25260 (E=2e-111) | acidic ribosomal protein P0-related (229 aa)
     
  0.953
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.949
Bra039933
Uncharacterized protein (237 aa)
     
 
  0.944
Bra039814
Uncharacterized protein (198 aa)
     
 
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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