STRINGSTRING
Bra009194 protein (Brassica rapa) - STRING interaction network
"Bra009194" - AT5G06430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009194AT5G06430 (E=1e-068) | thioredoxin-related (191 aa)    
Predicted Functional Partners:
Bra040405
AT3G04780 (E=2e-095) | Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein. (176 aa)
           
  0.660
Bra040121
AT3G04780 (E=5e-095) | Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein. (176 aa)
           
  0.660
Bra013352
AT4G18810 (E=2e-302) | binding / catalytic/ transcription repressor (600 aa)
   
          0.506
Bra014946
AT3G23400 (E=6e-083) | plastid-lipid associated protein PAP / fibrillin family protein (277 aa)
   
          0.499
Bra008097
AT1G73470 (E=1e-149) | unknown protein (356 aa)
   
          0.495
Bra003900
AT1G72030 (E=6e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)
   
          0.495
Bra008272
AT4G30620 (E=2e-027) | unknown protein (261 aa)
   
          0.488
Bra029139
AT5G52110 (E=6e-090) HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208) (224 aa)
   
          0.482
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
   
          0.479
Bra008533
AT4G01150 (E=1e-063) | unknown protein (169 aa)
   
          0.478
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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