STRINGSTRING
Bra009196 protein (Brassica rapa) - STRING interaction network
"Bra009196" - AT5G06460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009196AT5G06460 (E=0.0) ATUBA2, UBA 2 | ATUBA2; ubiquitin activating enzyme/ ubiquitin-protein ligase (991 aa)    
Predicted Functional Partners:
Bra022755
AT5G50870 (E=1e-103) UBC27 | UBC27 (ubiquitin-conjugating enzyme 27); ubiquitin-protein ligase (192 aa)
     
  0.964
Bra024598
AT1G23410 (E=2e-021) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (210 aa)
       
  0.962
Bra016346
AT1G23410 (E=6e-029) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (84 aa)
       
  0.962
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
  0.962
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
  0.962
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
  0.962
Bra029711
AT3G08690 (E=2e-081) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (310 aa)
     
  0.961
Bra041101
AT3G08690 (E=8e-085) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (148 aa)
       
  0.958
Bra036549
AT5G25760 (E=2e-085) PEX4, UBC21 | PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase (190 aa)
       
  0.958
Bra035606
AT5G56170 (E=2e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- LRE (LORELEI) (TAIR-AT4G26466.1); Has 71 Blast hits to 71 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (299 aa)
       
  0.958
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]